Last updated on 2024-12-26 13:49:51 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| abn | 5 | 3 | 5 |
Current CRAN status: ERROR: 5, NOTE: 3, OK: 5
Version: 3.1.1
Flags: --no-tests
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘INLA’
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64
Version: 3.1.1
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘INLA’
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 3.1.1
Check: installed package size
Result: NOTE
installed size is 13.3Mb
sub-directories of 1Mb or more:
data 1.0Mb
extdata 2.9Mb
libs 8.2Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 3.1.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [331s/360s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(abn)
abn version 3.1.1 (2024-05-22) is loaded.
To cite the package 'abn' in publications call: citation('abn').
Attaching package: 'abn'
The following object is masked from 'package:base':
factorial
>
> require(RhpcBLASctl)
Loading required package: RhpcBLASctl
> omp_set_num_threads(2)
>
> test_check("abn")
Loading required package: Matrix
Running in single core mode. 'cluster.type' is ignored.
Running in single core mode. 'cluster.type' is ignored.
Running in single core mode. 'cluster.type' is ignored.
Running in single core mode. 'cluster.type' is ignored.
[ FAIL 7 | WARN 0 | SKIP 58 | PASS 376 ]
══ Skipped tests (58) ══════════════════════════════════════════════════════════
• BuildScoreCache(method=mle) crashes with Poisson nodes (1):
'test-fitabn_mle.R:138:3'
• INLA is not tested on CRAN (1): 'test-search_hillclimber.R:79:7'
• On CRAN (53): 'test-Coutput.R:1:1', 'test-abn-methods.R:29:3',
'test-abn-methods.R:55:3', 'test-abn-methods.R:76:3',
'test-abn-methods.R:102:3', 'test-abn-methods.R:125:3',
'test-abn-methods.R:154:3', 'test-abn-methods.R:177:3',
'test-abn-methods.R:200:3', 'test-abn-methods.R:228:3',
'test-abn-methods.R:253:3', 'test-abn-methods.R:278:3',
'test-abn-methods.R:303:3', 'test-abn-methods.R:328:3',
'test-abn-methods.R:353:3', 'test-abn-methods.R:378:3',
'test-abn-methods.R:403:3', 'test-abn-methods.R:428:3',
'test-build_score_cache.R:122:3', 'test-build_score_cache.R:181:3',
'test-build_score_cache.R:331:3', 'test-build_score_cache.R:386:3',
'test-build_score_cache.R:434:3', 'test-build_score_cache_bayes.R:2:3',
'test-build_score_cache_bayes.R:33:3', 'test-build_score_cache_bayes.R:91:3',
'test-build_score_cache_bayes.R:127:3', 'test-calc_node_inla_glm.R:2:3',
'test-calc_node_inla_glmm.R:2:3', 'test-fitabn.R:26:3', 'test-fitabn.R:56:3',
'test-fitabn.R:75:3', 'test-fitabn.R:94:3', 'test-fitabn.R:136:3',
'test-fitabn.R:190:3', 'test-fitabn.R:379:3', 'test-fitabn_bayes.R:2:3',
'test-fitabn_mle.R:562:11', 'test-fitabn_mle.R:674:11',
'test-mostprobable.R:2:3', 'test-mostprobable.R:12:3',
'test-mostprobable.R:79:3', 'test-mostprobable.R:169:3',
'test-mostprobable.R:211:3', 'test-plot-abn.R:34:3', 'test-plot-abn.R:125:3',
'test-search_heuristic.R:2:3', 'test-search_hillclimber.R:16:3',
'test-search_hillclimber.R:84:3', 'test-simulateabn.R:508:3',
'test-simulateabn.R:810:3', 'test-tographviz.R:27:3',
'test-tographviz.R:171:3'
• Plot classic view is deprecated. (1): 'test-plot-abn.R:117:3'
• empty test (2): 'test-abn-methods.R:7:1', 'test-abn-methods.R:15:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-build_score_cache.R:41:7'): buildScoreCache() checks work fine ──
Expected `buildScoreCache(data.df = df, data.dists = dists)` to run without any errors.
i Actually got a <packageNotFoundError> with text:
there is no package called 'INLA'
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5
4. │ └─base::withCallingHandlers(...)
5. └─testthat::expect_no_error(buildScoreCache(data.df = df, data.dists = dists)) at test-build_score_cache.R:41:7
── Failure ('test-build_score_cache.R:42:7'): buildScoreCache() checks work fine ──
Expected `buildScoreCache(data.df = df, data.dists = dists, method = "Bayes")` to run without any errors.
i Actually got a <packageNotFoundError> with text:
there is no package called 'INLA'
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5
4. │ └─base::withCallingHandlers(...)
5. └─testthat::expect_no_error(...) at test-build_score_cache.R:42:7
── Failure ('test-build_score_cache.R:43:7'): buildScoreCache() checks work fine ──
Expected `buildScoreCache(data.df = df, data.dists = dists, method = "bayes")` to run without any errors.
i Actually got a <packageNotFoundError> with text:
there is no package called 'INLA'
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5
4. │ └─base::withCallingHandlers(...)
5. └─testthat::expect_no_error(...) at test-build_score_cache.R:43:7
── Failure ('test-build_score_cache.R:49:7'): buildScoreCache() checks work fine ──
Expected `buildScoreCache(...)` to run without any errors.
i Actually got a <packageNotFoundError> with text:
there is no package called 'INLA'
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5
4. │ └─base::withCallingHandlers(...)
5. └─testthat::expect_no_error(...) at test-build_score_cache.R:49:7
── Failure ('test-build_score_cache.R:53:7'): buildScoreCache() checks work fine ──
Expected `buildScoreCache(...)` to run without any errors.
i Actually got a <packageNotFoundError> with text:
there is no package called 'INLA'
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5
4. │ └─base::withCallingHandlers(...)
5. └─testthat::expect_no_error(...) at test-build_score_cache.R:53:7
── Failure ('test-build_score_cache.R:62:7'): buildScoreCache() checks work fine ──
Expected `buildScoreCache(...)` to run without any errors.
i Actually got a <packageNotFoundError> with text:
there is no package called 'INLA'
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5
4. │ └─base::withCallingHandlers(...)
5. └─testthat::expect_no_error(...) at test-build_score_cache.R:62:7
── Error ('test-build_score_cache.R:66:7'): buildScoreCache() checks work fine ──
<packageNotFoundError/error/condition>
Error in `library(p, character.only = TRUE)`: there is no package called 'INLA'
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5
4. │ └─base::withCallingHandlers(...)
5. ├─testthat::expect_warning(...) at test-build_score_cache.R:66:7
6. │ └─testthat:::expect_condition_matching(...)
7. │ └─testthat:::quasi_capture(...)
8. │ ├─testthat (local) .capture(...)
9. │ │ └─base::withCallingHandlers(...)
10. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
11. └─abn::buildScoreCache(...)
12. └─abn::buildScoreCache.bayes(...)
13. └─... %do% ...
14. └─e$fun(obj, substitute(ex), parent.frame(), e$data)
15. └─base::library(p, character.only = TRUE)
[ FAIL 7 | WARN 0 | SKIP 58 | PASS 376 ]
Deleting unused snapshots:
• tographviz/graph.dot
• tographviz/graph1.dot
• tographviz/graph_group.dot
Error: Test failures
Execution halted
Flavor: r-release-macos-arm64
Version: 3.1.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [10m/11m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(abn)
abn version 3.1.1 (2024-05-22) is loaded.
To cite the package 'abn' in publications call: citation('abn').
Attaching package: 'abn'
The following object is masked from 'package:base':
factorial
>
> require(RhpcBLASctl)
Loading required package: RhpcBLASctl
> omp_set_num_threads(2)
>
> test_check("abn")
Loading required package: Matrix
Running in single core mode. 'cluster.type' is ignored.
Running in single core mode. 'cluster.type' is ignored.
Running in single core mode. 'cluster.type' is ignored.
Running in single core mode. 'cluster.type' is ignored.
[ FAIL 7 | WARN 0 | SKIP 58 | PASS 376 ]
══ Skipped tests (58) ══════════════════════════════════════════════════════════
• BuildScoreCache(method=mle) crashes with Poisson nodes (1):
'test-fitabn_mle.R:138:3'
• INLA is not tested on CRAN (1): 'test-search_hillclimber.R:79:7'
• On CRAN (53): 'test-Coutput.R:1:1', 'test-abn-methods.R:29:3',
'test-abn-methods.R:55:3', 'test-abn-methods.R:76:3',
'test-abn-methods.R:102:3', 'test-abn-methods.R:125:3',
'test-abn-methods.R:154:3', 'test-abn-methods.R:177:3',
'test-abn-methods.R:200:3', 'test-abn-methods.R:228:3',
'test-abn-methods.R:253:3', 'test-abn-methods.R:278:3',
'test-abn-methods.R:303:3', 'test-abn-methods.R:328:3',
'test-abn-methods.R:353:3', 'test-abn-methods.R:378:3',
'test-abn-methods.R:403:3', 'test-abn-methods.R:428:3',
'test-build_score_cache.R:122:3', 'test-build_score_cache.R:181:3',
'test-build_score_cache.R:331:3', 'test-build_score_cache.R:386:3',
'test-build_score_cache.R:434:3', 'test-build_score_cache_bayes.R:2:3',
'test-build_score_cache_bayes.R:33:3', 'test-build_score_cache_bayes.R:91:3',
'test-build_score_cache_bayes.R:127:3', 'test-calc_node_inla_glm.R:2:3',
'test-calc_node_inla_glmm.R:2:3', 'test-fitabn.R:26:3', 'test-fitabn.R:56:3',
'test-fitabn.R:75:3', 'test-fitabn.R:94:3', 'test-fitabn.R:136:3',
'test-fitabn.R:190:3', 'test-fitabn.R:379:3', 'test-fitabn_bayes.R:2:3',
'test-fitabn_mle.R:562:11', 'test-fitabn_mle.R:674:11',
'test-mostprobable.R:2:3', 'test-mostprobable.R:12:3',
'test-mostprobable.R:79:3', 'test-mostprobable.R:169:3',
'test-mostprobable.R:211:3', 'test-plot-abn.R:34:3', 'test-plot-abn.R:125:3',
'test-search_heuristic.R:2:3', 'test-search_hillclimber.R:16:3',
'test-search_hillclimber.R:84:3', 'test-simulateabn.R:508:3',
'test-simulateabn.R:810:3', 'test-tographviz.R:27:3',
'test-tographviz.R:171:3'
• Plot classic view is deprecated. (1): 'test-plot-abn.R:117:3'
• empty test (2): 'test-abn-methods.R:7:1', 'test-abn-methods.R:15:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-build_score_cache.R:41:7'): buildScoreCache() checks work fine ──
Expected `buildScoreCache(data.df = df, data.dists = dists)` to run without any errors.
i Actually got a <packageNotFoundError> with text:
there is no package called 'INLA'
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5
4. │ └─base::withCallingHandlers(...)
5. └─testthat::expect_no_error(buildScoreCache(data.df = df, data.dists = dists)) at test-build_score_cache.R:41:7
── Failure ('test-build_score_cache.R:42:7'): buildScoreCache() checks work fine ──
Expected `buildScoreCache(data.df = df, data.dists = dists, method = "Bayes")` to run without any errors.
i Actually got a <packageNotFoundError> with text:
there is no package called 'INLA'
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5
4. │ └─base::withCallingHandlers(...)
5. └─testthat::expect_no_error(...) at test-build_score_cache.R:42:7
── Failure ('test-build_score_cache.R:43:7'): buildScoreCache() checks work fine ──
Expected `buildScoreCache(data.df = df, data.dists = dists, method = "bayes")` to run without any errors.
i Actually got a <packageNotFoundError> with text:
there is no package called 'INLA'
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5
4. │ └─base::withCallingHandlers(...)
5. └─testthat::expect_no_error(...) at test-build_score_cache.R:43:7
── Failure ('test-build_score_cache.R:49:7'): buildScoreCache() checks work fine ──
Expected `buildScoreCache(...)` to run without any errors.
i Actually got a <packageNotFoundError> with text:
there is no package called 'INLA'
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5
4. │ └─base::withCallingHandlers(...)
5. └─testthat::expect_no_error(...) at test-build_score_cache.R:49:7
── Failure ('test-build_score_cache.R:53:7'): buildScoreCache() checks work fine ──
Expected `buildScoreCache(...)` to run without any errors.
i Actually got a <packageNotFoundError> with text:
there is no package called 'INLA'
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5
4. │ └─base::withCallingHandlers(...)
5. └─testthat::expect_no_error(...) at test-build_score_cache.R:53:7
── Failure ('test-build_score_cache.R:62:7'): buildScoreCache() checks work fine ──
Expected `buildScoreCache(...)` to run without any errors.
i Actually got a <packageNotFoundError> with text:
there is no package called 'INLA'
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5
4. │ └─base::withCallingHandlers(...)
5. └─testthat::expect_no_error(...) at test-build_score_cache.R:62:7
── Error ('test-build_score_cache.R:66:7'): buildScoreCache() checks work fine ──
<packageNotFoundError/error/condition>
Error in `library(p, character.only = TRUE)`: there is no package called 'INLA'
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5
4. │ └─base::withCallingHandlers(...)
5. ├─testthat::expect_warning(...) at test-build_score_cache.R:66:7
6. │ └─testthat:::expect_condition_matching(...)
7. │ └─testthat:::quasi_capture(...)
8. │ ├─testthat (local) .capture(...)
9. │ │ └─base::withCallingHandlers(...)
10. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
11. └─abn::buildScoreCache(...)
12. └─abn::buildScoreCache.bayes(...)
13. └─... %do% ...
14. └─e$fun(obj, substitute(ex), parent.frame(), e$data)
15. └─base::library(p, character.only = TRUE)
[ FAIL 7 | WARN 0 | SKIP 58 | PASS 376 ]
Deleting unused snapshots:
• tographviz/graph.dot
• tographviz/graph1.dot
• tographviz/graph_group.dot
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64
Version: 3.1.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [393s/437s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(abn)
abn version 3.1.1 (2024-05-22) is loaded.
To cite the package 'abn' in publications call: citation('abn').
Attaching package: 'abn'
The following object is masked from 'package:base':
factorial
>
> require(RhpcBLASctl)
Loading required package: RhpcBLASctl
> omp_set_num_threads(2)
>
> test_check("abn")
Loading required package: Matrix
Running in single core mode. 'cluster.type' is ignored.
Running in single core mode. 'cluster.type' is ignored.
Running in single core mode. 'cluster.type' is ignored.
Running in single core mode. 'cluster.type' is ignored.
[ FAIL 7 | WARN 0 | SKIP 58 | PASS 376 ]
══ Skipped tests (58) ══════════════════════════════════════════════════════════
• BuildScoreCache(method=mle) crashes with Poisson nodes (1):
'test-fitabn_mle.R:138:3'
• INLA is not tested on CRAN (1): 'test-search_hillclimber.R:79:7'
• On CRAN (53): 'test-Coutput.R:1:1', 'test-abn-methods.R:29:3',
'test-abn-methods.R:55:3', 'test-abn-methods.R:76:3',
'test-abn-methods.R:102:3', 'test-abn-methods.R:125:3',
'test-abn-methods.R:154:3', 'test-abn-methods.R:177:3',
'test-abn-methods.R:200:3', 'test-abn-methods.R:228:3',
'test-abn-methods.R:253:3', 'test-abn-methods.R:278:3',
'test-abn-methods.R:303:3', 'test-abn-methods.R:328:3',
'test-abn-methods.R:353:3', 'test-abn-methods.R:378:3',
'test-abn-methods.R:403:3', 'test-abn-methods.R:428:3',
'test-build_score_cache.R:122:3', 'test-build_score_cache.R:181:3',
'test-build_score_cache.R:331:3', 'test-build_score_cache.R:386:3',
'test-build_score_cache.R:434:3', 'test-build_score_cache_bayes.R:2:3',
'test-build_score_cache_bayes.R:33:3', 'test-build_score_cache_bayes.R:91:3',
'test-build_score_cache_bayes.R:127:3', 'test-calc_node_inla_glm.R:2:3',
'test-calc_node_inla_glmm.R:2:3', 'test-fitabn.R:26:3', 'test-fitabn.R:56:3',
'test-fitabn.R:75:3', 'test-fitabn.R:94:3', 'test-fitabn.R:136:3',
'test-fitabn.R:190:3', 'test-fitabn.R:379:3', 'test-fitabn_bayes.R:2:3',
'test-fitabn_mle.R:562:11', 'test-fitabn_mle.R:674:11',
'test-mostprobable.R:2:3', 'test-mostprobable.R:12:3',
'test-mostprobable.R:79:3', 'test-mostprobable.R:169:3',
'test-mostprobable.R:211:3', 'test-plot-abn.R:34:3', 'test-plot-abn.R:125:3',
'test-search_heuristic.R:2:3', 'test-search_hillclimber.R:16:3',
'test-search_hillclimber.R:84:3', 'test-simulateabn.R:508:3',
'test-simulateabn.R:810:3', 'test-tographviz.R:27:3',
'test-tographviz.R:171:3'
• Plot classic view is deprecated. (1): 'test-plot-abn.R:117:3'
• empty test (2): 'test-abn-methods.R:7:1', 'test-abn-methods.R:15:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-build_score_cache.R:41:7'): buildScoreCache() checks work fine ──
Expected `buildScoreCache(data.df = df, data.dists = dists)` to run without any errors.
i Actually got a <packageNotFoundError> with text:
there is no package called 'INLA'
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5
4. │ └─base::withCallingHandlers(...)
5. └─testthat::expect_no_error(buildScoreCache(data.df = df, data.dists = dists)) at test-build_score_cache.R:41:7
── Failure ('test-build_score_cache.R:42:7'): buildScoreCache() checks work fine ──
Expected `buildScoreCache(data.df = df, data.dists = dists, method = "Bayes")` to run without any errors.
i Actually got a <packageNotFoundError> with text:
there is no package called 'INLA'
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5
4. │ └─base::withCallingHandlers(...)
5. └─testthat::expect_no_error(...) at test-build_score_cache.R:42:7
── Failure ('test-build_score_cache.R:43:7'): buildScoreCache() checks work fine ──
Expected `buildScoreCache(data.df = df, data.dists = dists, method = "bayes")` to run without any errors.
i Actually got a <packageNotFoundError> with text:
there is no package called 'INLA'
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5
4. │ └─base::withCallingHandlers(...)
5. └─testthat::expect_no_error(...) at test-build_score_cache.R:43:7
── Failure ('test-build_score_cache.R:49:7'): buildScoreCache() checks work fine ──
Expected `buildScoreCache(...)` to run without any errors.
i Actually got a <packageNotFoundError> with text:
there is no package called 'INLA'
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5
4. │ └─base::withCallingHandlers(...)
5. └─testthat::expect_no_error(...) at test-build_score_cache.R:49:7
── Failure ('test-build_score_cache.R:53:7'): buildScoreCache() checks work fine ──
Expected `buildScoreCache(...)` to run without any errors.
i Actually got a <packageNotFoundError> with text:
there is no package called 'INLA'
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5
4. │ └─base::withCallingHandlers(...)
5. └─testthat::expect_no_error(...) at test-build_score_cache.R:53:7
── Failure ('test-build_score_cache.R:62:7'): buildScoreCache() checks work fine ──
Expected `buildScoreCache(...)` to run without any errors.
i Actually got a <packageNotFoundError> with text:
there is no package called 'INLA'
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5
4. │ └─base::withCallingHandlers(...)
5. └─testthat::expect_no_error(...) at test-build_score_cache.R:62:7
── Error ('test-build_score_cache.R:66:7'): buildScoreCache() checks work fine ──
<packageNotFoundError/error/condition>
Error in `library(p, character.only = TRUE)`: there is no package called 'INLA'
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5
4. │ └─base::withCallingHandlers(...)
5. ├─testthat::expect_warning(...) at test-build_score_cache.R:66:7
6. │ └─testthat:::expect_condition_matching(...)
7. │ └─testthat:::quasi_capture(...)
8. │ ├─testthat (local) .capture(...)
9. │ │ └─base::withCallingHandlers(...)
10. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
11. └─abn::buildScoreCache(...)
12. └─abn::buildScoreCache.bayes(...)
13. └─... %do% ...
14. └─e$fun(obj, substitute(ex), parent.frame(), e$data)
15. └─base::library(p, character.only = TRUE)
[ FAIL 7 | WARN 0 | SKIP 58 | PASS 376 ]
Deleting unused snapshots:
• tographviz/graph.dot
• tographviz/graph1.dot
• tographviz/graph_group.dot
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 3.1.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [11m/13m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(abn)
abn version 3.1.1 (2024-05-22) is loaded.
To cite the package 'abn' in publications call: citation('abn').
Attaching package: 'abn'
The following object is masked from 'package:base':
factorial
>
> require(RhpcBLASctl)
Loading required package: RhpcBLASctl
> omp_set_num_threads(2)
>
> test_check("abn")
Loading required package: Matrix
Running in single core mode. 'cluster.type' is ignored.
Running in single core mode. 'cluster.type' is ignored.
Running in single core mode. 'cluster.type' is ignored.
Running in single core mode. 'cluster.type' is ignored.
[ FAIL 7 | WARN 0 | SKIP 58 | PASS 376 ]
══ Skipped tests (58) ══════════════════════════════════════════════════════════
• BuildScoreCache(method=mle) crashes with Poisson nodes (1):
'test-fitabn_mle.R:138:3'
• INLA is not tested on CRAN (1): 'test-search_hillclimber.R:79:7'
• On CRAN (53): 'test-Coutput.R:1:1', 'test-abn-methods.R:29:3',
'test-abn-methods.R:55:3', 'test-abn-methods.R:76:3',
'test-abn-methods.R:102:3', 'test-abn-methods.R:125:3',
'test-abn-methods.R:154:3', 'test-abn-methods.R:177:3',
'test-abn-methods.R:200:3', 'test-abn-methods.R:228:3',
'test-abn-methods.R:253:3', 'test-abn-methods.R:278:3',
'test-abn-methods.R:303:3', 'test-abn-methods.R:328:3',
'test-abn-methods.R:353:3', 'test-abn-methods.R:378:3',
'test-abn-methods.R:403:3', 'test-abn-methods.R:428:3',
'test-build_score_cache.R:122:3', 'test-build_score_cache.R:181:3',
'test-build_score_cache.R:331:3', 'test-build_score_cache.R:386:3',
'test-build_score_cache.R:434:3', 'test-build_score_cache_bayes.R:2:3',
'test-build_score_cache_bayes.R:33:3', 'test-build_score_cache_bayes.R:91:3',
'test-build_score_cache_bayes.R:127:3', 'test-calc_node_inla_glm.R:2:3',
'test-calc_node_inla_glmm.R:2:3', 'test-fitabn.R:26:3', 'test-fitabn.R:56:3',
'test-fitabn.R:75:3', 'test-fitabn.R:94:3', 'test-fitabn.R:136:3',
'test-fitabn.R:190:3', 'test-fitabn.R:379:3', 'test-fitabn_bayes.R:2:3',
'test-fitabn_mle.R:562:11', 'test-fitabn_mle.R:674:11',
'test-mostprobable.R:2:3', 'test-mostprobable.R:12:3',
'test-mostprobable.R:79:3', 'test-mostprobable.R:169:3',
'test-mostprobable.R:211:3', 'test-plot-abn.R:34:3', 'test-plot-abn.R:125:3',
'test-search_heuristic.R:2:3', 'test-search_hillclimber.R:16:3',
'test-search_hillclimber.R:84:3', 'test-simulateabn.R:508:3',
'test-simulateabn.R:810:3', 'test-tographviz.R:27:3',
'test-tographviz.R:171:3'
• Plot classic view is deprecated. (1): 'test-plot-abn.R:117:3'
• empty test (2): 'test-abn-methods.R:7:1', 'test-abn-methods.R:15:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-build_score_cache.R:41:7'): buildScoreCache() checks work fine ──
Expected `buildScoreCache(data.df = df, data.dists = dists)` to run without any errors.
i Actually got a <packageNotFoundError> with text:
there is no package called 'INLA'
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5
4. │ └─base::withCallingHandlers(...)
5. └─testthat::expect_no_error(buildScoreCache(data.df = df, data.dists = dists)) at test-build_score_cache.R:41:7
── Failure ('test-build_score_cache.R:42:7'): buildScoreCache() checks work fine ──
Expected `buildScoreCache(data.df = df, data.dists = dists, method = "Bayes")` to run without any errors.
i Actually got a <packageNotFoundError> with text:
there is no package called 'INLA'
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5
4. │ └─base::withCallingHandlers(...)
5. └─testthat::expect_no_error(...) at test-build_score_cache.R:42:7
── Failure ('test-build_score_cache.R:43:7'): buildScoreCache() checks work fine ──
Expected `buildScoreCache(data.df = df, data.dists = dists, method = "bayes")` to run without any errors.
i Actually got a <packageNotFoundError> with text:
there is no package called 'INLA'
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5
4. │ └─base::withCallingHandlers(...)
5. └─testthat::expect_no_error(...) at test-build_score_cache.R:43:7
── Failure ('test-build_score_cache.R:49:7'): buildScoreCache() checks work fine ──
Expected `buildScoreCache(...)` to run without any errors.
i Actually got a <packageNotFoundError> with text:
there is no package called 'INLA'
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5
4. │ └─base::withCallingHandlers(...)
5. └─testthat::expect_no_error(...) at test-build_score_cache.R:49:7
── Failure ('test-build_score_cache.R:53:7'): buildScoreCache() checks work fine ──
Expected `buildScoreCache(...)` to run without any errors.
i Actually got a <packageNotFoundError> with text:
there is no package called 'INLA'
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5
4. │ └─base::withCallingHandlers(...)
5. └─testthat::expect_no_error(...) at test-build_score_cache.R:53:7
── Failure ('test-build_score_cache.R:62:7'): buildScoreCache() checks work fine ──
Expected `buildScoreCache(...)` to run without any errors.
i Actually got a <packageNotFoundError> with text:
there is no package called 'INLA'
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5
4. │ └─base::withCallingHandlers(...)
5. └─testthat::expect_no_error(...) at test-build_score_cache.R:62:7
── Error ('test-build_score_cache.R:66:7'): buildScoreCache() checks work fine ──
<packageNotFoundError/error/condition>
Error in `library(p, character.only = TRUE)`: there is no package called 'INLA'
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5
4. │ └─base::withCallingHandlers(...)
5. ├─testthat::expect_warning(...) at test-build_score_cache.R:66:7
6. │ └─testthat:::expect_condition_matching(...)
7. │ └─testthat:::quasi_capture(...)
8. │ ├─testthat (local) .capture(...)
9. │ │ └─base::withCallingHandlers(...)
10. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
11. └─abn::buildScoreCache(...)
12. └─abn::buildScoreCache.bayes(...)
13. └─... %do% ...
14. └─e$fun(obj, substitute(ex), parent.frame(), e$data)
15. └─base::library(p, character.only = TRUE)
[ FAIL 7 | WARN 0 | SKIP 58 | PASS 376 ]
Deleting unused snapshots:
• tographviz/graph.dot
• tographviz/graph1.dot
• tographviz/graph_group.dot
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 3.1.1
Check: tests
Result: ERROR
Running 'testthat.R' [130s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(abn)
abn version 3.1.1 (2024-05-22) is loaded.
To cite the package 'abn' in publications call: citation('abn').
Attaching package: 'abn'
The following object is masked from 'package:base':
factorial
>
> require(RhpcBLASctl)
Loading required package: RhpcBLASctl
> omp_set_num_threads(2)
>
> test_check("abn")
Loading required package: Matrix
Running in single core mode. 'cluster.type' is ignored.
Running in single core mode. 'cluster.type' is ignored.
Running in single core mode. 'cluster.type' is ignored.
Running in single core mode. 'cluster.type' is ignored.
[ FAIL 7 | WARN 0 | SKIP 83 | PASS 251 ]
══ Skipped tests (83) ══════════════════════════════════════════════════════════
• BuildScoreCache(method=mle) crashes with Poisson nodes (1):
'test-fitabn_mle.R:138:3'
• INLA is not tested on CRAN (1): 'test-search_hillclimber.R:79:7'
• On CRAN (51): 'test-Coutput.R:1:1', 'test-abn-methods.R:29:3',
'test-abn-methods.R:55:3', 'test-abn-methods.R:76:3',
'test-abn-methods.R:102:3', 'test-abn-methods.R:125:3',
'test-abn-methods.R:154:3', 'test-abn-methods.R:177:3',
'test-abn-methods.R:200:3', 'test-abn-methods.R:228:3',
'test-abn-methods.R:253:3', 'test-abn-methods.R:278:3',
'test-abn-methods.R:303:3', 'test-abn-methods.R:328:3',
'test-abn-methods.R:353:3', 'test-abn-methods.R:378:3',
'test-abn-methods.R:403:3', 'test-abn-methods.R:428:3',
'test-build_score_cache.R:122:3', 'test-build_score_cache.R:181:3',
'test-build_score_cache.R:331:3', 'test-build_score_cache.R:386:3',
'test-build_score_cache.R:434:3', 'test-build_score_cache_bayes.R:2:3',
'test-build_score_cache_bayes.R:33:3', 'test-build_score_cache_bayes.R:91:3',
'test-build_score_cache_bayes.R:127:3', 'test-calc_node_inla_glm.R:2:3',
'test-calc_node_inla_glmm.R:2:3', 'test-fitabn.R:26:3', 'test-fitabn.R:56:3',
'test-fitabn.R:75:3', 'test-fitabn.R:94:3', 'test-fitabn.R:136:3',
'test-fitabn.R:190:3', 'test-fitabn.R:379:3', 'test-fitabn_bayes.R:2:3',
'test-mostprobable.R:2:3', 'test-mostprobable.R:12:3',
'test-mostprobable.R:79:3', 'test-mostprobable.R:169:3',
'test-mostprobable.R:211:3', 'test-plot-abn.R:34:3', 'test-plot-abn.R:125:3',
'test-search_heuristic.R:2:3', 'test-search_hillclimber.R:16:3',
'test-search_hillclimber.R:84:3', 'test-simulateabn.R:508:3',
'test-simulateabn.R:810:3', 'test-tographviz.R:27:3',
'test-tographviz.R:171:3'
• Plot classic view is deprecated. (1): 'test-plot-abn.R:117:3'
• `buildScoreCache.mle()` is tested mainly on Unix-like systems. (6):
'test-build_score_cache_mle.R:32:5', 'test-build_score_cache_mle.R:84:5',
'test-build_score_cache_mle.R:121:5', 'test-build_score_cache_mle.R:159:5',
'test-build_score_cache_mle.R:220:5', 'test-build_score_cache_mle.R:260:5'
• empty test (3): 'test-abn-methods.R:7:1', 'test-abn-methods.R:15:1',
'test-build_score_cache_mle.R:264:1'
• fitAbn.mle() is tested mainly on Unix-like systems (8):
'test-fitabn_mle.R:32:7', 'test-fitabn_mle.R:83:7',
'test-fitabn_mle.R:132:7', 'test-fitabn_mle.R:286:7',
'test-fitabn_mle.R:384:7', 'test-fitabn_mle.R:482:7',
'test-fitabn_mle.R:592:9', 'test-fitabn_mle.R:704:9'
• simulateAbn() is tested mainly on Unix-like systems (12):
'test-simulateabn.R:35:5', 'test-simulateabn.R:90:5',
'test-simulateabn.R:139:5', 'test-simulateabn.R:188:5',
'test-simulateabn.R:236:5', 'test-simulateabn.R:304:5',
'test-simulateabn.R:373:5', 'test-simulateabn.R:422:5',
'test-simulateabn.R:471:5', 'test-simulateabn.R:704:5',
'test-simulateabn.R:805:5', 'test-simulateabn.R:994:9'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-build_score_cache.R:41:7'): buildScoreCache() checks work fine ──
Expected `buildScoreCache(data.df = df, data.dists = dists)` to run without any errors.
i Actually got a <packageNotFoundError> with text:
there is no package called 'INLA'
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5
4. │ └─base::withCallingHandlers(...)
5. └─testthat::expect_no_error(buildScoreCache(data.df = df, data.dists = dists)) at test-build_score_cache.R:41:7
── Failure ('test-build_score_cache.R:42:7'): buildScoreCache() checks work fine ──
Expected `buildScoreCache(data.df = df, data.dists = dists, method = "Bayes")` to run without any errors.
i Actually got a <packageNotFoundError> with text:
there is no package called 'INLA'
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5
4. │ └─base::withCallingHandlers(...)
5. └─testthat::expect_no_error(...) at test-build_score_cache.R:42:7
── Failure ('test-build_score_cache.R:43:7'): buildScoreCache() checks work fine ──
Expected `buildScoreCache(data.df = df, data.dists = dists, method = "bayes")` to run without any errors.
i Actually got a <packageNotFoundError> with text:
there is no package called 'INLA'
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5
4. │ └─base::withCallingHandlers(...)
5. └─testthat::expect_no_error(...) at test-build_score_cache.R:43:7
── Failure ('test-build_score_cache.R:49:7'): buildScoreCache() checks work fine ──
Expected `buildScoreCache(...)` to run without any errors.
i Actually got a <packageNotFoundError> with text:
there is no package called 'INLA'
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5
4. │ └─base::withCallingHandlers(...)
5. └─testthat::expect_no_error(...) at test-build_score_cache.R:49:7
── Failure ('test-build_score_cache.R:53:7'): buildScoreCache() checks work fine ──
Expected `buildScoreCache(...)` to run without any errors.
i Actually got a <packageNotFoundError> with text:
there is no package called 'INLA'
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5
4. │ └─base::withCallingHandlers(...)
5. └─testthat::expect_no_error(...) at test-build_score_cache.R:53:7
── Failure ('test-build_score_cache.R:62:7'): buildScoreCache() checks work fine ──
Expected `buildScoreCache(...)` to run without any errors.
i Actually got a <packageNotFoundError> with text:
there is no package called 'INLA'
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5
4. │ └─base::withCallingHandlers(...)
5. └─testthat::expect_no_error(...) at test-build_score_cache.R:62:7
── Error ('test-build_score_cache.R:66:7'): buildScoreCache() checks work fine ──
<packageNotFoundError/error/condition>
Error in `library(p, character.only = TRUE)`: there is no package called 'INLA'
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-build_score_cache.R:33:3
2. │ └─base::withCallingHandlers(...)
3. ├─base::suppressMessages(...) at test-build_score_cache.R:34:5
4. │ └─base::withCallingHandlers(...)
5. ├─testthat::expect_warning(...) at test-build_score_cache.R:66:7
6. │ └─testthat:::expect_condition_matching(...)
7. │ └─testthat:::quasi_capture(...)
8. │ ├─testthat (local) .capture(...)
9. │ │ └─base::withCallingHandlers(...)
10. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
11. └─abn::buildScoreCache(...)
12. └─abn::buildScoreCache.bayes(...)
13. └─... %do% ...
14. └─e$fun(obj, substitute(ex), parent.frame(), e$data)
15. └─base::library(p, character.only = TRUE)
[ FAIL 7 | WARN 0 | SKIP 83 | PASS 251 ]
Deleting unused snapshots:
• tographviz/graph.dot
• tographviz/graph1.dot
• tographviz/graph_group.dot
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-x86_64