Detecting Epidemics using School Absenteeism


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Documentation for package ‘DESA’ version 1.0.0

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alarm_metrics Create an Alarm Metrics Object
alarm_plot_data Create Alarm Plot Data Object
best_model Create Best Model
catchment_sim Simulating catchment areas
compile_epi Compile Epidemic Data
create_alarm_metrics_summary Create Alarm Metrics Summary
elementary_pop Create Elementary Schools population size
eval_metrics Evaluate Alarm Metrics for Epidemic Models
plot.alarm_metrics Plot Heatmap of Alarm Metrics
plot.alarm_plot_data Plot Epidemic Data with Alarm Metrics
plot.ssir_epidemic Plot method for a single SSIR epidemic simulation
plot.ssir_epidemic_multi Plot method for multiple SSIR epidemic simulations
plot_single_epidemic Plot a single epidemic simulation
simulate_households Simulate total households and individuals data
ssir Stochastic SIR simulation
subpop_children Simulate households with children
subpop_noChildren Simulate households without children
summary.alarm_metrics_summary Summary of Alarm Metrics
summary.ssir_epidemic S3 Summary method for epidemic Simulation
summary.ssir_epidemic_multi S3 Summary method for multiple epidemic simulations