CRAN Package Check Results for Maintainer ‘Wei-Chen Chen <wccsnow at gmail.com>’

Last updated on 2025-01-03 01:49:06 CET.

Package ERROR WARN NOTE OK
cubfits 4 9
EMCluster 5 8
MixfMRI 4 9
MixSim 13
pbdMPI 4 2 7
pbdSLAP 4 2 7
pbdZMQ 1 12
phyclust 10 3
pmclust 4 9
QZ 1 12

Package cubfits

Current CRAN status: NOTE: 4, OK: 9

Version: 0.1-4
Check: package dependencies
Result: NOTE Package which this enhances but not available for checking: ‘pbdMPI’ Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Package EMCluster

Current CRAN status: ERROR: 5, OK: 8

Additional issues

0len gcc-UBSAN

Version: 0.2-16
Check: examples
Result: ERROR Running examples in ‘EMCluster-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: EM Algorithm > ### Title: EM Algorithm for model-based clustering > ### Aliases: emcluster shortemcluster simple.init 'emret class' 'emobj > ### object' > ### Keywords: programming > > ### ** Examples > > library(EMCluster, quietly = TRUE) > set.seed(1234) > x1 <- da1$da > > emobj <- simple.init(x1, nclass = 10) *** caught segfault *** address 0x1, cause 'memory not mapped' Traceback: 1: init.EM(x, nclass = nclass, lab = lab, EMC = EMC, stable.solution = stable.solution, min.n = min.n, min.n.iter = min.n.iter, method = "Rnd.EM") 2: rand.EM(x, nclass, EMC = .emc, stable.solution = FALSE, min.n.iter = 1) 3: simple.init(x1, nclass = 10) An irrecoverable exception occurred. R is aborting now ... Segmentation fault Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 0.2-16
Check: examples
Result: ERROR Running examples in ‘EMCluster-Ex.R’ failed The error most likely occurred in: > ### Name: EM Algorithm > ### Title: EM Algorithm for model-based clustering > ### Aliases: emcluster shortemcluster simple.init 'emret class' 'emobj > ### object' > ### Keywords: programming > > ### ** Examples > > library(EMCluster, quietly = TRUE) > set.seed(1234) > x1 <- da1$da > > emobj <- simple.init(x1, nclass = 10) *** caught segfault *** address 0x1, cause 'memory not mapped' Traceback: 1: init.EM(x, nclass = nclass, lab = lab, EMC = EMC, stable.solution = stable.solution, min.n = min.n, min.n.iter = min.n.iter, method = "Rnd.EM") 2: rand.EM(x, nclass, EMC = .emc, stable.solution = FALSE, min.n.iter = 1) 3: simple.init(x1, nclass = 10) An irrecoverable exception occurred. R is aborting now ... Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.2-16
Check: examples
Result: ERROR Running examples in 'EMCluster-Ex.R' failed The error most likely occurred in: > ### Name: EM Algorithm > ### Title: EM Algorithm for model-based clustering > ### Aliases: emcluster shortemcluster simple.init 'emret class' 'emobj > ### object' > ### Keywords: programming > > ### ** Examples > > library(EMCluster, quietly = TRUE) > set.seed(1234) > x1 <- da1$da > > emobj <- simple.init(x1, nclass = 10) Flavor: r-devel-windows-x86_64

Package MixfMRI

Current CRAN status: NOTE: 4, OK: 9

Version: 0.1-4
Check: package dependencies
Result: NOTE Package which this enhances but not available for checking: ‘pbdMPI’ Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Package MixSim

Current CRAN status: OK: 13

Package pbdMPI

Current CRAN status: ERROR: 4, WARN: 2, OK: 7

Version: 0.5-2
Check: whether the namespace can be unloaded cleanly
Result: WARN ---- unloading Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.5-2
Check: top-level files
Result: NOTE possible bashism in configure.ac line 73 (test -a/-o): if test -n "${MPI_INCLUDE_PATH}" -a -z "${MPI_LIBPATH}" ; then possible bashism in configure.ac line 76 (test -a/-o): if test -z "${MPI_INCLUDE_PATH}" -a -n "${MPI_LIBPATH}" ; then possible bashism in configure.ac line 111 (test -a/-o): if test "$MPITYPE" = "UNKNOWN" -o "$MPITYPE" = "OPENMPI" ; then possible bashism in configure.ac line 115 (test -a/-o): if test "$SED" != "F" -a "$MPICC" != "F" -a "$OMPI_INFO" != "F" ; then possible bashism in configure.ac line 154 (test -a/-o): if test "${TMP_INC}" != "F" -a "${TMP_LIB}" != "F" ; then possible bashism in configure.ac line 169 (test -a/-o): if test "$TMP_INC" = "F" -o "$TMP_LIB" = "F" ; then possible bashism in configure.ac line 214 (test -a/-o): if test "${TMP_INC}" != "F" -a "${TMP_LIB}" != "F" ; then possible bashism in configure.ac line 239 (test -a/-o): if test "$MPITYPE" = "UNKNOWN" -o "$MPITYPE" = "IBMMPI" ; then possible bashism in configure.ac line 243 (test -a/-o): if test "$SED" != "F" -a "$MPICC" != "F" -a "$OMPI_INFO" != "F" ; then possible bashism in configure.ac line 275 (test -a/-o): if test "${TMP_INC}" != "F" -a "${TMP_LIB}" != "F" ; then possible bashism in configure.ac line 297 (test -a/-o): if test "$MPITYPE" = "MPICH2" -o "$MPITYPE" = "MPICH" -o "$MPITYPE" = "MPICH3" ; then possible bashism in configure.ac line 301 (test -a/-o): if test "$SED" != "F" -a "$MPICC" != "F" ; then possible bashism in configure.ac line 353 (test -a/-o): if test "${TMP_INC}" != "F" -a "${TMP_LIB}" != "F" ; then possible bashism in configure.ac line 368 (test -a/-o): if test "$TMP_INC" = "F" -o "$TMP_LIB" = "F" ; then possible bashism in configure.ac line 413 (test -a/-o): if test "${TMP_INC}" != "F" -a "${TMP_LIB}" != "F" ; then possible bashism in configure.ac line 779 (test -a/-o): if test "$MPITYPE" = "OPENMPI" -o "$MPITYPE" = "IBMMPI" -o "$MPITYPE" = "LAM" -o "$MPITYPE" = "MPICH2" -o "$MPITYPE" = "MPICH3" -o "$MPITYPE" = "INTELMPI" ; then possible bashism in configure.ac line 837 (test -a/-o): if test "X$MPIRUN" = "X" -o "X$MPIEXEC" = "X" -o "X$ORTERUN" = "X" ; then possible bashism in configure.ac line 842 (test -a/-o): if test "$MPITYPE" = "MPICH" -o "$MPITYPE" = "MPICH2" -o "$MPITYPE" = "MPICH3" -o "$MPITYPE" = "MPICH3" ; then possible bashism in configure.ac line 846 ($"foo" should be eval_gettext "foo"): if test $"X$TMP_MODULE" != "X" ; then Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 0.5-2
Check: whether package can be installed
Result: ERROR Installation failed. Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Package pbdSLAP

Current CRAN status: ERROR: 4, NOTE: 2, OK: 7

Version: 0.3-7
Check: package dependencies
Result: ERROR Package required but not available: ‘pbdMPI’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 0.3-7
Check: installed package size
Result: NOTE installed size is 5.6Mb sub-directories of 1Mb or more: lib 2.9Mb libs 2.4Mb Flavors: r-release-windows-x86_64, r-oldrel-windows-x86_64

Package pbdZMQ

Current CRAN status: NOTE: 1, OK: 12

Version: 0.3-13
Check: top-level files
Result: NOTE possible bashism in configure.ac line 55 (test -a/-o): if test "X$GET_PKG_CONFIG" = "Xyes" -a "X$GET_SYSTEM_ZMQ" = "Xyes" -a "X$ENABLE_INTERNAL_ZMQ" = "Xno" ; then possible bashism in configure.ac line 76 (test -a/-o): if test "X$EXTERNAL_ZMQ_INCLUDE" != "X" -a "X$EXTERNAL_ZMQ_LDFLAGS" != "X" ; then possible bashism in configure.ac line 85 (test -a/-o): if test "X$SYSTEM_ZMQ_INCLUDEDIR" != "X" -a "X$SYSTEM_ZMQ_LIBDIR" != "X" ; then possible bashism in configure.ac line 96 (test -a/-o): if test "$ZMQ_INCLUDE" != "-I./zmqsrc/include" -a "$ZMQ_LDFLAGS" != "-L./ -lzmq" ; then Flavor: r-devel-linux-x86_64-fedora-gcc

Package phyclust

Current CRAN status: NOTE: 10, OK: 3

Version: 0.1-34
Check: Rd files
Result: NOTE checkRd: (-1) 11_d.init.method.Rd:22-23: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:24-25: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:26-27: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:28-29: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:30-31: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.method.Rd:32: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.procedure.Rd:21-23: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.procedure.Rd:24-26: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.procedure.Rd:27-30: Lost braces in \itemize; meant \describe ? checkRd: (-1) 11_d.init.procedure.Rd:31-35: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.star.tree.Rd:26: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.star.tree.Rd:27: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.star.tree.Rd:28: Lost braces in \itemize; meant \describe ? checkRd: (-1) as.star.tree.Rd:29: Lost braces in \itemize; meant \describe ? Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

Package pmclust

Current CRAN status: ERROR: 4, OK: 9

Version: 0.2-1
Check: package dependencies
Result: ERROR Package required but not available: ‘pbdMPI’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Package QZ

Current CRAN status: NOTE: 1, OK: 12

Version: 0.2-3
Check: top-level files
Result: NOTE possible bashism in configure.ac line 29 (test -a/-o): if test "X$echo_ok" = "Xyes" -a "X$grep_ok" = "Xyes"; then possible bashism in configure.ac line 62 (test -a/-o): if test "X$ls_ok" = "Xyes" -a "X$sed_ok" = "Xyes" -a "X$grep_ok" = "Xyes"; then Flavor: r-devel-linux-x86_64-fedora-gcc