Last updated on 2025-01-03 01:48:52 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| lme4 | 1 | 10 | 2 |
Current CRAN status: ERROR: 1, NOTE: 10, OK: 2
Version: 1.1-35.5
Check: compiled code
Result: NOTE
File ‘lme4/libs/lme4.so’:
Found non-API call to R: ‘SET_TYPEOF’
Compiled code should not call non-API entry points in R.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.1-35.5
Check: tests
Result: ERROR
Running ‘AAAtest-all.R’ [29s/32s]
Running ‘HSAURtrees.R’ [2s/2s]
Running ‘REMLdev.R’ [2s/2s]
Running ‘ST.R’ [2s/2s]
Running ‘agridat_gotway.R’ [2s/3s]
Running ‘bootMer.R’ [5s/12s]
Running ‘boundary.R’ [5s/6s]
Running ‘confint.R’ [3s/4s]
Running ‘devCritFun.R’ [2s/2s]
Running ‘drop.R’ [2s/2s]
Running ‘drop1contrasts.R’ [2s/2s]
Running ‘dynload.R’ [0s/0s]
Running ‘elston.R’ [2s/2s]
Running ‘evalCall.R’ [2s/2s]
Running ‘extras.R’ [2s/2s]
Running ‘falsezero_dorie.R’ [2s/2s]
Running ‘fewlevels.R’ [0s/0s]
Running ‘getME.R’ [2s/2s]
Running ‘glmer-1.R’ [3s/3s]
Running ‘glmerControlPass.R’ [4s/4s]
Running ‘glmerWarn.R’ [2s/3s]
Running ‘glmmExt.R’ [5s/6s]
Running ‘glmmWeights.R’ [5s/5s]
Running ‘hatvalues.R’ [2s/2s]
Running ‘is.R’ [2s/2s]
Running ‘lmList-tst.R’ [2s/2s]
Running ‘lme4_nlme.R’ [2s/2s]
Running ‘lmer-0.R’ [2s/2s]
Running ‘lmer-1.R’ [2s/2s]
Running ‘lmer-conv.R’ [2s/2s]
Running ‘lmer2_ex.R’ [2s/2s]
Running ‘methods.R’ [3s/3s]
Running ‘minval.R’ [2s/2s]
Running ‘modFormula.R’ [3s/3s]
Running ‘nbinom.R’ [2s/2s]
Running ‘nlmer-conv.R’ [2s/2s]
Running ‘nlmer.R’ [2s/2s]
Running ‘offset.R’ [2s/3s]
Running ‘optimizer.R’ [4s/4s]
Running ‘polytomous.R’ [2s/2s]
Running ‘prLogistic.R’ [2s/2s]
Running ‘predict_basis.R’ [2s/2s]
Running ‘predsim.R’ [2s/3s]
Running ‘priorWeights.R’ [4s/4s]
Running ‘priorWeightsModComp.R’ [3s/3s]
Running ‘profile-tst.R’ [2s/2s]
Running ‘refit.R’ [2s/2s]
Running ‘resids.R’ [2s/2s]
Running ‘respiratory.R’ [5s/6s]
Running ‘simulate.R’ [2s/2s]
Running ‘test-glmernbref.R’ [3s/3s]
Running ‘testOptControl.R’ [2s/2s]
Running ‘testcolonizer.R’ [2s/2s]
Running ‘testcrab.R’ [5s/6s]
Running ‘throw.R’ [3s/4s]
Running ‘varcorr.R’ [2s/2s]
Running ‘vcov-etc.R’ [2s/2s]
Running the tests in ‘tests/AAAtest-all.R’ failed.
Complete output:
> if (base::require("testthat", quietly = TRUE)) {
+ pkg <- "lme4"
+ require(pkg, character.only=TRUE, quietly=TRUE)
+ if(getRversion() < "3.5.0") { withAutoprint <- identity ; prt <- print } else { prt <- identity }
+ if(Sys.getenv("USER") %in% c("maechler", "bbolker")) withAutoprint({
+ ## for developers' sake:
+ lP <- .libPaths() # ---- .libPaths() : ----
+ prt(lP)
+ ## ---- Entries in .libPaths()[1] : ----
+ prt(list.files(lP[1], include.dirs=TRUE))
+ prt(sessionInfo())
+ prt(packageDescription("Matrix"))
+ ## 'lme4' from packageDescription "file" :
+ prt(attr(packageDescription("lme4"), "file"))
+ })
+ test_check(pkg)
+ ##======== ^^^
+ print(warnings()) # TODO? catch most of these by expect_warning(..)
+ } else {
+ cat( "package 'testthat' not available, cannot run unit tests\n" )
+ }
[ FAIL 1 | WARN 0 | SKIP 1 | PASS 570 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• On CRAN (1): 'test-eval.R:2:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-glmFamily.R:30:21'): inverse link and muEta functions ──────────
Error in `fam$linkinv(x)`: REAL() can only be applied to a 'numeric', not a 'integer'
Backtrace:
▆
1. └─lme4 (local) tst.lnki(binomial(), etas) at test-glmFamily.R:38:5
2. └─base::sapply(frm, function(x) expect_that(fam$linkinv(x), equals(ff$linkInv(x)))) at test-glmFamily.R:30:9
3. └─base::lapply(X = X, FUN = FUN, ...)
4. └─lme4 (local) FUN(X[[i]], ...)
5. ├─testthat::expect_that(fam$linkinv(x), equals(ff$linkInv(x))) at test-glmFamily.R:30:21
6. │ └─testthat (local) condition(object)
7. │ └─testthat::expect_equal(x, expected, ..., expected.label = label)
8. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
9. │ └─rlang::eval_bare(expr, quo_get_env(quo))
10. └─fam$linkinv(x)
[ FAIL 1 | WARN 0 | SKIP 1 | PASS 570 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.1-35.5
Check: compiled code
Result: NOTE
File 'lme4/libs/x64/lme4.dll':
Found non-API call to R: 'SET_TYPEOF'
Compiled code should not call non-API entry points in R.
See 'Writing portable packages' in the 'Writing R Extensions' manual,
and section 'Moving into C API compliance' for issues with the use of
non-API entry points.
Flavor: r-devel-windows-x86_64
Version: 1.1-35.5
Check: installed package size
Result: NOTE
installed size is 27.3Mb
sub-directories of 1Mb or more:
R 1.5Mb
doc 1.6Mb
libs 22.1Mb
testdata 1.3Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64