Striped Smith-Waterman Algorithm for Sequence Alignment using SIMD

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Documentation for package ‘ssw’ version 0.2.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

align	Perform Smith-Waterman alignment of a read against a reference sequence
force_align	Perform forced alignment with increased gap open penalty
formatter	Format and pretty-print SSW forced alignment results without truncation
install_ssw_py	Install ssw-py and its dependencies
is_installed_ssw_py	Is ssw-py installed?
print.ssw	Print SSW alignment results
ssw_py	Global reference to ssw-py