# Acoustic Template Detection in R

## Documentation for package ‘monitoR’ version 1.0.7

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

monitoR-package | Automated Acoustic Monitoring-overview and examples
batchBinMatch | Batch Template Detection
batchCorMatch | Batch Template Detection
bindEvents | Summarize/Archive Manually Derived Sound Events
binMatch | Calculate Spectrogram Template Matching Scores
binTemplate-class | Class '"Template"'
binTemplateList-class | Class '"TemplateList"'
btnw | Black-Throated Green Warbler (_Setophaga virens_) Song
changeSampRate | Resample Wave objects
collapseClips | Summarize/Archive Song Events
combineBinTemplates | Combine Acoustic Template Lists
combineCorTemplates | Combine Acoustic Template Lists
compareTemplates | Compare Performance of Templates
corMatch | Calculate Spectrogram Template Matching Scores
corTemplate-class | Class '"Template"'
corTemplateList-class | Class '"TemplateList"'
cutWave | Extract Shorter Wave Objects from other Wave Objects
dbDownloadCardRecorderID | Retrieve Card-Recorder ID Values or Survey Names from a Database
dbDownloadResult | Create 'detectionList' Objects from Data Stored in a Database
dbDownloadSurvey | Retrieve Card-Recorder ID Values or Survey Names from a Database
dbDownloadTemplate | Retrieve templates from an acoustics database
dbSchema | Upload a MySQL Database Schema to Create Tables in an Acoustics Database
dbUploadAnno | Upload Spectrogram Annotations to an Acoustics Database
dbUploadResult | Upload Detection Results to an Acoustics Database
dbUploadSurvey | Upload Survey Metadata to an Acoustics Database
dbUploadTemplate | Upload Acoustic Templates to a Database
detectionList-class | Class '"detectionList"'
eventEval | Evaluate Detected Events with Known Event Sources and Times
fileCopyRename | Copy and Rename Sound Files from Portable Media
findPeaks | Find Score Peaks and Detections in a 'templateScores' Object
getDetections | Extract Detections or Peaks from a 'detectionList' Object
getPeaks | Extract Detections or Peaks from a 'detectionList' Object
getTemplates | Extract a Template List
gray.1 | Color Vectors for Spectrograms
gray.2 | Color Vectors for Spectrograms
gray.3 | Color Vectors for Spectrograms
makeBinTemplate | Make an Acoustic Template
makeCorTemplate | Make an Acoustic Template
monitoR | Automated Acoustic Monitoring-overview and examples
mp3Subsamp | Extract Short Surveys from Longer mp3 Recordings
oven | Ovenbird (_Seiurus aurocapilla_) Song
plot-method | Methods for the 'plot' Function
plot-methods | Methods for the 'plot' Function
rainbow.1 | Color Vectors for Spectrograms
readBinTemplates | Read Acoustic Templates from a Local Disk
readCorTemplates | Read Acoustic Templates from a Local Disk
readMP3 | Read MP3 Files into a Wave Object
show-method | Methods for the 'show' and 'summary' Functions
show-methods | Methods for the 'show' and 'summary' Functions
showPeaks | View or Verify Detections or Peaks
specCols | Color Vectors for Spectrograms
summary-method | Methods for the 'show' and 'summary' Functions
summary-methods | Methods for the 'show' and 'summary' Functions
survey | Sample Acoustic Survey (Short)
survey_anno | Annotations for 'survey'
Template-class | Class '"Template"'
templateComment | Query or Set Template Cutoffs
templateComment<- | Query or Set Template Cutoffs
templateCutoff | Query or Set Template Cutoffs
templateCutoff<- | Query or Set Template Cutoffs
TemplateList-class | Class '"TemplateList"'
templateNames | Names of Templates
templateNames<- | Names of Templates
templatePath | Song clip path of Templates
templatePath<- | Song clip path of Templates
templateScores-class | Class '"templateScores"'
timeAlign | Condense Detections or Peaks from Multiple Templates
topo.1 | Color Vectors for Spectrograms
viewSpec | Interactively View and Annotate Spectrograms
writeBinTemplates | Write Acoustic Templates to Text Files
writeCorTemplates | Write Acoustic Templates to Text Files
[-method | Indexing (Extraction) Methods for 'monitoR' Package
[-methods | Indexing (Extraction) Methods for 'monitoR' Package