CNV-Profile Regression for Copy Number Variants Association Analysis with Penalized Regression

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Documentation for package ‘CNVreg’ version 1.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

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CNV	Simulated data with copy number variants (CNV), Covariates (Cov), and outcomes traits (Y_QT for a continuous outcome and Y_BT for a binary outcome)for the illustration of CNV association analysis with penalized regression in CNVreg.
CNVCOVY	Simulated data with copy number variants (CNV), Covariates (Cov), and outcomes traits (Y_QT for a continuous outcome and Y_BT for a binary outcome)for the illustration of CNV association analysis with penalized regression in CNVreg.
Cov	Simulated data with copy number variants (CNV), Covariates (Cov), and outcomes traits (Y_QT for a continuous outcome and Y_BT for a binary outcome)for the illustration of CNV association analysis with penalized regression in CNVreg.
cvfit_WTSMTH	Penalized Regression with Lasso and Weighted Fusion Penalties with Cross-Validation
fit_WTSMTH	Penalized Regression with Lasso and Weighted Fusion Penalties with Given Parameters
prep	Prepare Data for Analysis
Y_BT	Simulated data with copy number variants (CNV), Covariates (Cov), and outcomes traits (Y_QT for a continuous outcome and Y_BT for a binary outcome)for the illustration of CNV association analysis with penalized regression in CNVreg.
Y_QT	Simulated data with copy number variants (CNV), Covariates (Cov), and outcomes traits (Y_QT for a continuous outcome and Y_BT for a binary outcome)for the illustration of CNV association analysis with penalized regression in CNVreg.